PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G11020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 467aa    MW: 52391.8 Da    PI: 8.1213
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G11020.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95e-15131210186
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                      f+k +++s+v +  +l lp  f++++  +k  +++++lede+g+  + ++   +++++  l++GW++F+  +++k+gD+vvF+l++
  ONIVA01G11020.1 131 FVKHMLHSHVVSGFWLGLPAGFCNKFL-PK-HDTDIVLEDENGNNHNTNY--LGGKQG--LSAGWRGFAINHDIKVGDVVVFELVH 210
                      899********************8884.33.5679***************..888888..9**********************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-16125209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-20126209IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-23129213No hitNo description
PROSITE profilePS5086310.123131235IPR003340B3 DNA binding domain
PfamPF023622.3E-13131210IPR003340B3 DNA binding domain
SMARTSM010195.5E-12131223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAIDQPIKKR GRPPGSKNTK NKMEQKMELV HQRLALLDSS SGSDRDDDIG PRMLMPKEVE  60
NEQRTVPGIP QTCNTQNTSN GRTNTTEVPV KGQNKCASYL PKKSSVQAFC GSAMKRAQEI  120
QTKLPAEHPS FVKHMLHSHV VSGFWLGLPA GFCNKFLPKH DTDIVLEDEN GNNHNTNYLG  180
GKQGLSAGWR GFAINHDIKV GDVVVFELVH IIRDKNISPT DRAPGLKSFY ACKKRKISKE  240
ATDNATKPKE DPETTRVSSK VAHDDTQNLV HEAIDGIRFS DSEMSFDDVM SYSNFNIVVD  300
GLVIDCKFPD HQRRTYYELC CAQKSFLHRH LLRQLSLTLV VGVIMETINI AEGIRACGAG  360
TSSQEDFLIW KKTLQSFDLL GMNVAFLLKR VDDLLGLPEQ PRDPSECSKY NELKLERSRA  420
GEKVKALESM MLTVKDVLKK IDAEMEEMES SVRNHDIALR KIATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063320.0AK106332.1 Oryza sativa Japonica Group cDNA clone:002-101-F09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623792.10.0PREDICTED: B3 domain-containing protein Os01g0234100
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A0E0FJ540.0A0A0E0FJ54_ORYNI; Uncharacterized protein
STRINGBGIOSGA003083-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-30B3 family protein